Publications

O. Chernomor, C. Elgert, A. von Haeseler (2023)
Identifying equally scoring trees in phylogenomics with incomplete data using Gentrius
bioRxiv (DOI: 10.1101/2023.01.19.524678)

J. Kaczanowska^e, F. Ganglberger^e, O. Chernomor^e, D. Kargl, B. Galik, A. Hess, Y. Moodley, A. von Haeseler, K. Bühler, W. Haubensak (2022)
Molecular archaeology of human cognitive traits.
Cell Rep. 40(9):111287 (DOI: 10.1016/j.celrep.2022.111287, PMID: 36044840)
^e contributed equally

O. Chernomor^e, L. Peters^e, J. Schneidewind^e, A. Loeschcke, E. Knieps-Grünhagen, F. Schmitz, E. von Lieres, R.J. Kutta, V. Svensson, K.-E. Jaeger, T. Drepper, A. von Haeseler, and U. Krauss (2021)
Complex evolution of light-dependent protochlorophyllide oxidoreductases in aerobic anoxygenic phototrophs: origin, phylogeny and function.
Mol. Biol. Evol., Volume 38, Issue 3, Pages 819–837. (DOI: 10.1093/molbev/msaa234, PMID: 32931580)
^e contributed equally

B.Q. Minh, H.A. Schmidt, O. Chernomor, D. Schrempf, M.D. Woodhams, A. von Haeseler^s, and R. Lanfear^s (2020)
IQ-TREE 2: New models and efficient methods for phylogenetic inference in the genomic era.
Mol. Biol. Evol., 37, 1530-1534. (free reprint, DOI: 10.1093/molbev/msaa015, PMID: 32011700, software)
^s co-senior authors.

P. Breitling, A. Stamatakis, O. Chernomor, B. Bettisworth, and L. Reszczynski (2019)
Empirical Analysis of Phylogenetic Quasi-Terraces
bioRxiv, 810309. (DOI: 10.1101/810309)

D.T. Hoang^e, O. Chernomor^e, A. von Haeseler, B.Q. Minh^c, and L.S. Vinh^c (2018)
UFBoot2: Improving the ultrafast bootstrap approximation.
Mol. Biol. Evol., 35, 518-522. (free reprint, DOI: 10.1093/molbev/msx281, PMID: 29077904, software)
^e contributed equally, ^c corresponding authors.

O. Chernomor, A. von Haeseler, and B.Q. Minh (2016)
Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices.
Syst. Biol., 65, 997-1008. (free reprint, DOI: 10.1093/sysbio/syw037, PMID: 27121966, software)

O. Chernomor, S. Klaere, A. von Haeseler, and B.Q. Minh (2016)
Split diversity: measuring and optimizing biodiversity using phylogenetic split networks.
In R. Pellens and P. Grandcolas (eds.) Biodiversity Conservation and Phylogenetic Systematics (Series: Topics in Biodiversity and Conservation, Vol. 14), 173-195, Springer, Heidelberg/New York. (DOI: 10.1007/978-3-319-22461-9_9, book-DOI: 10.1007/978-3-319-22461-9_9, eISBN: 978-3-319-22461-9, ISBN: 978-3-319-22460-2)

O. Chernomor, B.Q. Minh^c, F. Forest, S. Klaere, T. Ingram, M. Henzinger, and A. von Haeseler (2015)
Split Diversity in Constrained Conservation Prioritization using Integer Linear Programming.
Methods Ecol. Evol., 6, 83-91. (DOI: 10.1111/2041-210X.12299), ^c corresponding author

O. Chernomor, B.Q. Minh, and A. von Haeseler (2015)
Consequences of Common Topological Rearrangements for Partition Trees in Phylogenomic Inference.
J. Comput. Biol., 22, 1129-1142. (DOI: 10.1089/cmb.2015.0146, PMID: 26448206)